Identification of an intronic splicing enhancer essential for the inclusion of FGFR2 exon IIIc.

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TítuloIdentification of an intronic splicing enhancer essential for the inclusion of FGFR2 exon IIIc.
Publication TypeJournal Article
Year of Publication2008
AutoresSeth, P, Miller, HB, Lasda, EL, Pearson, JL, García-Blanco, MA
JournalJ Biol Chem
Volume283
Issue15
Pagination10058-67
Date Published2008 Apr 11
ISSN0021-9258
Palabras claveAlternative Splicing, Animals, Enhancer Elements, Genetic, Epithelium, Exons, Globins, HeLa Cells, Humans, Mesoderm, Mice, Organ Specificity, Rats, Receptor, Fibroblast Growth Factor, Type 2, Ribonucleoprotein, U1 Small Nuclear
Abstract

The ligand specificity of fibroblast growth factor receptor 2 (FGFR2) is determined by the alternative splicing of exons 8 (IIIb) or 9 (IIIc). Exon IIIb is included in epithelial cells, whereas exon IIIc is included in mesenchymal cells. Although a number of cis elements and trans factors have been identified that play a role in exon IIIb inclusion in epithelium, little is known about the activation of exon IIIc in mesenchyme. We report here the identification of a splicing enhancer required for IIIc inclusion. This 24-nucleotide (nt) downstream intronic splicing enhancer (DISE) is located within intron 9 immediately downstream of exon IIIc. DISE was able to activate the inclusion of heterologous exons rat FGFR2 IIIb and human beta-globin exon 2 in cell lines from different tissues and species and also in HeLa cell nuclear extracts in vitro. DISE was capable of replacing the intronic activator sequence 1 (IAS1), a known IIIb splicing enhancer and vice versa. This fact, together with the requirement for DISE to be close to the 5'-splice site and the ability of DISE to promote binding of U1 snRNP, suggested that IAS1 and DISE belong to the same class of cis-acting elements.

DOI10.1074/jbc.M800087200
Alternate JournalJ. Biol. Chem.
PubMed ID18256031